QualSBMLError.h File Reference

Represents SBML errors and other diagnostics. More...

This graph shows which files directly or indirectly include this file:

Enumerations
enum	QualSBMLErrorCode_t {   QualUnknown = 3010100,   QualNSUndeclared = 3010101,   QualElementNotInNs = 3010102,   QualFunctionTermBool = 3010201,   QualMathCSymbolDisallowed = 3010202,   QualDuplicateComponentId = 3010301,   QualAttributeRequiredMissing = 3020101,   QualAttributeRequiredMustBeBoolean = 3020102,   QualRequiredTrueIfTransitions = 3020103,   QualOneListOfTransOrQS = 3020201,   QualEmptyLONotAllowed = 3020202,   QualLOTransitiondAllowedElements = 3020203,   QualLOQualSpeciesAllowedElements = 3020204,   QualLOQualSpeciesAllowedAttributes = 3020205,   QualLOTransitionsAllowedAttributes = 3020206,   QualQualSpeciesAllowedCoreAttributes = 3020301,   QualQualSpeciesAllowedElements = 3020302,   QualQualSpeciesAllowedAttributes = 3020303,   QualConstantMustBeBool = 3020304,   QualNameMustBeString = 3020305,   QualInitialLevelMustBeInt = 3020306,   QualMaxLevelMustBeInt = 3020307,   QualCompartmentMustReferExisting = 3020308,   QualInitialLevelCannotExceedMax = 3020309,   QualConstantQSCannotBeOutput = 3020310,   QualQSAssignedOnlyOnce = 3020311,   QualInitalLevelNotNegative = 3020312,   QualMaxLevelNotNegative = 3020313,   QualTransitionAllowedCoreAttributes = 3020401,   QualTransitionAllowedElements = 3020402,   QualTransitionAllowedAttributes = 3020403,   QualTransitionNameMustBeString = 3020404,   QualTransitionLOElements = 3020405,   QualTransitionEmptyLOElements = 3020406,   QualTransitionLOInputElements = 3020407,   QualTransitionLOOutputElements = 3020408,   QualTransitionLOFuncTermElements = 3020409,   QualTransitionLOInputAttributes = 3020410,   QualTransitionLOOutputAttributes = 3020411,   QualTransitionLOFuncTermAttributes = 3020412,   QualTransitionLOFuncTermExceedMax = 3020413,   QualTransitionLOFuncTermNegative = 3020414,   QualInputAllowedCoreAttributes = 3020501,   QualInputAllowedElements = 3020502,   QualInputAllowedAttributes = 3020503,   QualInputNameMustBeString = 3020504,   QualInputSignMustBeSignEnum = 3020505,   QualInputTransEffectMustBeInputEffect = 3020506,   QualInputThreshMustBeInteger = 3020507,   QualInputQSMustBeExistingQS = 3020508,   QualInputConstantCannotBeConsumed = 3020509,   QualInputThreshMustBeNonNegative = 3020510,   QualOutputAllowedCoreAttributes = 3020601,   QualOutputAllowedElements = 3020602,   QualOutputAllowedAttributes = 3020603,   QualOutputNameMustBeString = 3020604,   QualOutputTransEffectMustBeOutput = 3020605,   QualOutputLevelMustBeInteger = 3020606,   QualOutputQSMustBeExistingQS = 3020607,   QualOutputConstantMustBeFalse = 3020608,   QualOutputProductionMustHaveLevel = 3020609,   QualOutputLevelMustBeNonNegative = 3020610,   QualDefaultTermAllowedCoreAttributes = 3020701,   QualDefaultTermAllowedElements = 3020702,   QualDefaultTermAllowedAttributes = 3020703,   QualDefaultTermResultMustBeInteger = 3020704,   QualDefaultTermResultMustBeNonNeg = 3020705,   QualFuncTermAllowedCoreAttributes = 3020801,   QualFuncTermAllowedElements = 3020802,   QualFuncTermAllowedAttributes = 3020803,   QualFuncTermOnlyOneMath = 3020804,   QualFuncTermResultMustBeInteger = 3020805,   QualFuncTermResultMustBeNonNeg = 3020806 }
	Codes for all SBML-level errors and warnings from the 'qual' package. More...

Detailed Description

Represents SBML errors and other diagnostics.

Author

Michael Hucka

Sarah Keating

Enumeration Type Documentation

enum QualSBMLErrorCode_t

Codes for all SBML-level errors and warnings from the 'qual' package.

These are distinguished from other SBML error codes by having a number between 3000000 and 3099999.

Calling programs may wish to check which enumeration a given SBMLError object's error identifier is actually from:

• 0000000 to 0009999: XMLErrorCode_t (a low-level XML problem)

• 0010000 to 0099999: SBMLErrorCode_t (a problem with the SBML core specification)
• 1000000 to 1099999: CompSBMLErrorCode_t (a problem with the SBML Level 3 Hierarchical Model Composition package specification).

• 2000000 to 2099999: FbcSBMLErrorCode_t (a problem with the SBML Level 3 Flux Balance Constraints package specification).

• 3000000 to 3099999: QualSBMLErrorCode_t (a problem with the SBML Level 3 Qualitative Models package specification).

• 6000000 to 6099999: LayoutSBMLErrorCode_t (a problem with the SBML Level 3 Layout package specification).

Other error code ranges are reserved for other packages.

Enumerator
QualUnknown	Unknown error from qual.
QualNSUndeclared	The qual ns is not correctly declared.
QualElementNotInNs	Element not in qual namespace.
QualFunctionTermBool	FunctionTerm should return boolean.
QualMathCSymbolDisallowed	CSymbol time or delay not allowed.
QualDuplicateComponentId	Duplicate 'id' attribute value.
QualAttributeRequiredMissing	Required qual:required attribute on <sbml>.
QualAttributeRequiredMustBeBoolean	The qual:required attribute must be Boolean.
QualRequiredTrueIfTransitions	The qual:required attribute must be 'true' if math changes.
QualOneListOfTransOrQS	Only one <listOfTransitions> or <listOfQualitativeSpecies> allowed.
QualEmptyLONotAllowed	Empty <listOfTransitions> or <listOfQualitativeSpecies> not allowed.
QualLOTransitiondAllowedElements	Elements allowed on <listOfTransitions>.
QualLOQualSpeciesAllowedElements	Elements allowed on <listOfTransitions>.
QualLOQualSpeciesAllowedAttributes	Attributes allowed on <listOfQualitativeSpecies>.
QualLOTransitionsAllowedAttributes	Attributes allowed on <listOfTransitions>.
QualQualSpeciesAllowedCoreAttributes	Core attributes allowed on <qualitativeSpecies>.
QualQualSpeciesAllowedElements	Elements allowed on <qualitativeSpecies>.
QualQualSpeciesAllowedAttributes	Attributes allowed on <qualitativeSpecies>.
QualConstantMustBeBool	Attribute 'constant' on <qualitativeSpecies> must be boolean.
QualNameMustBeString	Attribute 'name' on <qualitativeSpecies> must be string.
QualInitialLevelMustBeInt	Attribute 'initialLevel' on <qualitativeSpecies> must be integer.
QualMaxLevelMustBeInt	Attribute 'maxLevel' on <qualitativeSpecies> must be integer.
QualCompartmentMustReferExisting	Attribute 'compartment' on <qualitativeSpecies> must reference compartment.
QualInitialLevelCannotExceedMax	Attribute 'initialLevel' on <qualitativeSpecies> cannot exceed maxLevel.
QualConstantQSCannotBeOutput	Constant <qualitativeSpecies> cannot be an Output.
QualQSAssignedOnlyOnce	A <qualitativeSpecies> can only be assigned once.
QualInitalLevelNotNegative	Attribute 'initialLevel' on <qualitativeSpecies> cannot be negative.
QualMaxLevelNotNegative	Attribute 'maxLevel' on <qualitativeSpecies> cannot be negative.
QualTransitionAllowedCoreAttributes	Core attributes allowed on <transition>.
QualTransitionAllowedElements	Elements allowed on <transition>.
QualTransitionAllowedAttributes	Attributes allowed on <transition>.
QualTransitionNameMustBeString	Attribute 'name' on <transition> must be string.
QualTransitionLOElements	ListOf elements on <transition>.
QualTransitionEmptyLOElements	ListOf elements on <transition> not empty.
QualTransitionLOInputElements	Elements on <listOfInputs>.
QualTransitionLOOutputElements	Elements on <listOfOutputs>.
QualTransitionLOFuncTermElements	Elements on <listOfFunctionTerms>.
QualTransitionLOInputAttributes	Attributes allowed on <listOfInputs>.
QualTransitionLOOutputAttributes	Attributes allowed on <listOfOutputs>.
QualTransitionLOFuncTermAttributes	Attributes allowed on <listOfFunctionTerms>.
QualTransitionLOFuncTermExceedMax	<listOfFunctionTerms> cannot make qualitativeSpecies exceed maxLevel.
QualTransitionLOFuncTermNegative	<listOfFunctionTerms> cannot make qualitativeSpecies negative.
QualInputAllowedCoreAttributes	Core attributes allowed on <input>.
QualInputAllowedElements	Elements allowed on <input>.
QualInputAllowedAttributes	Attributes allowed on <input>.
QualInputNameMustBeString	Attribute 'name' on <input> must be string.
QualInputSignMustBeSignEnum	Attribute 'sign' on <input> must be enum.
QualInputTransEffectMustBeInputEffect	Attribute 'transitionEffect' on <input> must be enum.
QualInputThreshMustBeInteger	Attribute 'thresholdLevel' on <input> must be non negative integer.
QualInputQSMustBeExistingQS	Attribute 'qualitativeSpecies' on <input> must refer to existing.
QualInputConstantCannotBeConsumed	Constant <input> cannot be consumed.
QualInputThreshMustBeNonNegative	Attribute 'thresholdLevel' on <input> must be non negative integer.
QualOutputAllowedCoreAttributes	Core attributes allowed on <output>.
QualOutputAllowedElements	Elements allowed on <output>.
QualOutputAllowedAttributes	Attributes allowed on <output>.
QualOutputNameMustBeString	Attribute 'name' on <output> must be string.
QualOutputTransEffectMustBeOutput	Attribute 'transitionEffect' on <output> must be enum.
QualOutputLevelMustBeInteger	Attribute 'outputLevel' on <output> must be non negative integer.
QualOutputQSMustBeExistingQS	Attribute 'qualitativeSpecies' on <output> must refer to existing.
QualOutputConstantMustBeFalse	Constant 'qualitativeSpecies' cannot be <output>.
QualOutputProductionMustHaveLevel	<output> being produced must have level.
QualOutputLevelMustBeNonNegative	Attribute 'outputLevel' on <output> must be non negative integer.
QualDefaultTermAllowedCoreAttributes	Core attributes allowed on <defaultTerm>.
QualDefaultTermAllowedElements	Elements allowed on <defaultTerm>.
QualDefaultTermAllowedAttributes	Attributes allowed on <defaultTerm>.
QualDefaultTermResultMustBeInteger	Attribute 'resultLevel' on <defaultTerm> must be non negative integer.
QualDefaultTermResultMustBeNonNeg	Attribute 'resultLevel' on <defaultTerm> must be non negative integer.
QualFuncTermAllowedCoreAttributes	Core attributes allowed on <functionTerm>.
QualFuncTermAllowedElements	Elements allowed on <functionTerm>.
QualFuncTermAllowedAttributes	Attributes allowed on <functionTerm>.
QualFuncTermOnlyOneMath	Only one <math> on <functionTerm>.
QualFuncTermResultMustBeInteger	Attribute 'resultLevel' on <functionTerm> must be non negative integer.
QualFuncTermResultMustBeNonNeg	Attribute 'resultLevel' on <functionTerm> must be non negative integer..