CompSBMLError.h File Reference

Represents SBML errors and other diagnostics. More...

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Enumerations
enum	CompSBMLErrorCode_t {   CompUnknown = 1010100,   CompNSUndeclared = 1010101,   CompElementNotInNs = 1010102,   CompDuplicateComponentId = 1010301,   CompUniqueModelIds = 1010302,   CompUniquePortIds = 1010303,   CompInvalidSIdSyntax = 1010304,   CompInvalidSubmodelRefSyntax = 1010308,   CompInvalidDeletionSyntax = 1010309,   CompInvalidConversionFactorSyntax = 1010310,   CompInvalidNameSyntax = 1010311,   CompReplacedUnitsShouldMatch = 1010501,   CompOneListOfReplacedElements = 1020101,   CompLOReplaceElementsAllowedElements = 1020102,   CompLOReplacedElementsAllowedAttribs = 1020103,   CompEmptyLOReplacedElements = 1020104,   CompOneReplacedByElement = 1020105,   CompAttributeRequiredMissing = 1020201,   CompAttributeRequiredMustBeBoolean = 1020202,   CompRequiredTrueIfElementsRemain = 1020203,   CompRequiredFalseIfAllElementsReplaced = 1020204,   CompOneListOfModelDefinitions = 1020205,   CompEmptyLOModelDefs = 1020206,   CompLOModelDefsAllowedElements = 1020207,   CompLOExtModelDefsAllowedElements = 1020208,   CompLOModelDefsAllowedAttributes = 1020209,   CompLOExtModDefsAllowedAttributes = 1020210,   CompOneListOfExtModelDefinitions = 1020211,   CompAttributeRequiredMustBeTrue = 1020212,   CompExtModDefAllowedCoreAttributes = 1020301,   CompExtModDefAllowedElements = 1020302,   CompExtModDefAllowedAttributes = 1020303,   CompReferenceMustBeL3 = 1020304,   CompModReferenceMustIdOfModel = 1020305,   CompExtModMd5DoesNotMatch = 1020306,   CompInvalidSourceSyntax = 1020307,   CompInvalidModelRefSyntax = 1020308,   CompInvalidMD5Syntax = 1020309,   CompCircularExternalModelReference = 1020310,   CompOneListOfOnModel = 1020501,   CompNoEmptyListOfOnModel = 1020502,   CompLOSubmodelsAllowedElements = 1020503,   CompLOPortsAllowedElements = 1020504,   CompLOSubmodelsAllowedAttributes = 1020505,   CompLOPortsAllowedAttributes = 1020506,   CompSubmodelAllowedCoreAttributes = 1020601,   CompSubmodelAllowedElements = 1020602,   CompOneListOfDeletionOnSubmodel = 1020603,   CompSubmodelNoEmptyLODeletions = 1020604,   CompLODeletionsAllowedElements = 1020605,   CompLODeletionAllowedAttributes = 1020606,   CompSubmodelAllowedAttributes = 1020607,   CompModReferenceSyntax = 1020608,   CompInvalidTimeConvFactorSyntax = 1020613,   CompInvalidExtentConvFactorSyntax = 1020614,   CompSubmodelMustReferenceModel = 1020615,   CompSubmodelCannotReferenceSelf = 1020616,   CompModCannotCircularlyReferenceSelf = 1020617,   CompTimeConversionMustBeParameter = 1020622,   CompExtentConversionMustBeParameter = 1020623,   CompPortRefMustReferencePort = 1020701,   CompIdRefMustReferenceObject = 1020702,   CompUnitRefMustReferenceUnitDef = 1020703,   CompMetaIdRefMustReferenceObject = 1020704,   CompParentOfSBRefChildMustBeSubmodel = 1020705,   CompInvalidPortRefSyntax = 1020706,   CompInvalidIdRefSyntax = 1020707,   CompInvalidUnitRefSyntax = 1020708,   CompInvalidMetaIdRefSyntax = 1020709,   CompOneSBaseRefOnly = 1020710,   CompDeprecatedSBaseRefSpelling = 1020711,   CompSBaseRefMustReferenceObject = 1020712,   CompSBaseRefMustReferenceOnlyOneObject = 1020713,   CompNoMultipleReferences = 1020714,   CompPortMustReferenceObject = 1020801,   CompPortMustReferenceOnlyOneObject = 1020802,   CompPortAllowedAttributes = 1020803,   CompPortReferencesUnique = 1020804,   CompDeletionMustReferenceObject = 1020901,   CompDeletionMustReferOnlyOneObject = 1020902,   CompDeletionAllowedAttributes = 1020903,   CompReplacedElementMustRefObject = 1021001,   CompReplacedElementMustRefOnlyOne = 1021002,   CompReplacedElementAllowedAttributes = 1021003,   CompReplacedElementSubModelRef = 1021004,   CompReplacedElementDeletionRef = 1021005,   CompReplacedElementConvFactorRef = 1021006,   CompReplacedElementSameReference = 1021010,   CompReplacedElementNoDelAndConvFact = 1021011,   CompReplacedByMustRefObject = 1021101,   CompReplacedByMustRefOnlyOne = 1021102,   CompReplacedByAllowedAttributes = 1021103,   CompReplacedBySubModelRef = 1021104,   CompMustReplaceSameClass = 1021201,   CompMustReplaceIDs = 1021202,   CompMustReplaceMetaIDs = 1021203,   CompMustReplacePackageIDs = 1021204,   CompUnresolvedReference = 1090101,   CompNoModelInReference = 1090102,   CompExtModDefBad = 1090103,   CompModelFlatteningFailed = 1090104,   CompFlatModelNotValid = 1090105,   CompLineNumbersUnreliable = 1090106,   CompFlatteningNotRecognisedReqd = 1090107,   CompFlatteningNotRecognisedNotReqd = 1090108,   CompFlatteningNotImplementedNotReqd = 1090109,   CompFlatteningNotImplementedReqd = 1090110,   CompFlatteningWarning = 1090111,   CompDeprecatedDeleteFunction = 1090112,   CompDeprecatedReplaceFunction = 1090113,   CompDeletedReplacement = 1090114,   CompIdRefMayReferenceUnknownPackage = 1090115,   CompMetaIdRefMayReferenceUnknownPkg = 1090116 }
	Codes for all SBML-level errors and warnings from the 'comp' package. More...

Detailed Description

Represents SBML errors and other diagnostics.

Author

Michael Hucka

Sarah Keating

Enumeration Type Documentation

enum CompSBMLErrorCode_t

Codes for all SBML-level errors and warnings from the 'comp' package.

These are distinguished from other SBML error codes by having a number between 1000000 and 1099999.

Calling programs may wish to check which enumeration a given SBMLError object's error identifier is actually from:

• 0000000 to 0009999: XMLErrorCode_t (a low-level XML problem)

• 0010000 to 0099999: SBMLErrorCode_t (a problem with the SBML core specification)
• 1000000 to 1099999: CompSBMLErrorCode_t (a problem with the SBML Level 3 Hierarchical Model Composition package specification).

• 2000000 to 2099999: FbcSBMLErrorCode_t (a problem with the SBML Level 3 Flux Balance Constraints package specification).

• 3000000 to 3099999: QualSBMLErrorCode_t (a problem with the SBML Level 3 Qualitative Models package specification).

• 6000000 to 6099999: LayoutSBMLErrorCode_t (a problem with the SBML Level 3 Layout package specification).

Other error code ranges are reserved for other packages.

Enumerator
CompUnknown	Unknown error from comp
CompNSUndeclared	The comp ns is not correctly declared
CompElementNotInNs	Element not in comp namespace
CompDuplicateComponentId	Duplicate 'id' attribute value
CompUniqueModelIds	Model and ExternalModelDefinitions must have unique ids
CompUniquePortIds	Ports must have unique ids
CompInvalidSIdSyntax	Invalid SId syntax
CompInvalidSubmodelRefSyntax	Invalid submodelRef syntax
CompInvalidDeletionSyntax	Invalid deletion syntax
CompInvalidConversionFactorSyntax	Invalid conversionFactor syntax
CompInvalidNameSyntax	Invalid name syntax
CompReplacedUnitsShouldMatch	Units of replaced elements should match replacement units.
CompOneListOfReplacedElements	Only one <listOfReplacedElements> allowed.
CompLOReplaceElementsAllowedElements	Allowed children of <listOfReplacedElements>
CompLOReplacedElementsAllowedAttribs	Allowed <listOfReplacedElements> attributes
CompEmptyLOReplacedElements	<listOfReplacedElements> must not be empty
CompOneReplacedByElement	Only one <replacedBy> object allowed.
CompAttributeRequiredMissing	Required comp:required attribute on <sbml>
CompAttributeRequiredMustBeBoolean	The comp:required attribute must be Boolean
CompRequiredTrueIfElementsRemain	The comp:required attribute must be 'true' if math changes. NOTE: Deprecated
CompRequiredFalseIfAllElementsReplaced	The comp:required attribute must be 'false' if math does not change. NOTE: Deprecated
CompOneListOfModelDefinitions	Only one <listOfModelDefinitions> allowed.
CompEmptyLOModelDefs	<listOfModelDefinitions> and <listOfExternalModelDefinitions> must not be empty
CompLOModelDefsAllowedElements	Only <modelDefinitions> in <listOfModelDefinitions>
CompLOExtModelDefsAllowedElements	Only <externalModelDefinitions> in <listOfExternalModelDefinitions>
CompLOModelDefsAllowedAttributes	Allowed <listOfModelDefinitions> attributes
CompLOExtModDefsAllowedAttributes	Allowed <listOfExternalModelDefinitions> attributes
CompOneListOfExtModelDefinitions	Only one <listOfExternalModelDefinitions> allowed.
CompAttributeRequiredMustBeTrue	The comp:required attribute must be 'true'
CompExtModDefAllowedCoreAttributes	Allowed <externalModelDefinitions> core attributes
CompExtModDefAllowedElements	Allowed <externalModelDefinitions> elements
CompExtModDefAllowedAttributes	Allowed <externalModelDefinitions> attributes
CompReferenceMustBeL3	External models must be L3
CompModReferenceMustIdOfModel	'modelRef' must be the 'id' of a model in the 'source' document
CompExtModMd5DoesNotMatch	MD5 checksum does not match the 'source' document
CompInvalidSourceSyntax	The 'comp:source' attribute must be of type 'anyURI'
CompInvalidModelRefSyntax	The 'comp:modelRef' attribute must have the syntax of 'SId'
CompInvalidMD5Syntax	The 'comp:md5' attribute must have the syntax of 'string'
CompCircularExternalModelReference	Circular reference in <externalModelDefinition>
CompOneListOfOnModel	Only one <listOfSubmodels> and one <listOfPorts> allowed
CompNoEmptyListOfOnModel	No empty listOf elements allowed
CompLOSubmodelsAllowedElements	Allowed elements on <listOfSubmodels>
CompLOPortsAllowedElements	Allowed elements on <listOfPorts>
CompLOSubmodelsAllowedAttributes	Allowed attributes on <listOfSubmodels>
CompLOPortsAllowedAttributes	Allowed attributes on <listOfPorts>
CompSubmodelAllowedCoreAttributes	Allowed core attributes on <submodel>
CompSubmodelAllowedElements	Allowed elements on <submodel>
CompOneListOfDeletionOnSubmodel	Only one <listOfDeletions> on a <submodel> allowed
CompSubmodelNoEmptyLODeletions	No empty listOfDeletions elements allowed
CompLODeletionsAllowedElements	Allowed elements on <listOfDeletions>
CompLODeletionAllowedAttributes	Allowed <listOfDeletions> attributes
CompSubmodelAllowedAttributes	Allowed <submodel> attributes
CompModReferenceSyntax	'comp:modelRef' must conform to SId syntax
CompInvalidTimeConvFactorSyntax	'comp:timeConversionFactor' must conform to SId syntax
CompInvalidExtentConvFactorSyntax	'comp:extentConversionFactor' must conform to SId syntax
CompSubmodelMustReferenceModel	The 'comp:modelRef' attribute must reference a model
CompSubmodelCannotReferenceSelf	The 'comp:modelRef' attribute cannot reference own model
CompModCannotCircularlyReferenceSelf	<model> may not reference <submodel> that references itself.
CompTimeConversionMustBeParameter	The 'comp:timeConversionFactor' must reference a parameter
CompExtentConversionMustBeParameter	The 'comp:extentConversionFactor' must reference a parameter
CompPortRefMustReferencePort	The 'comp:portRef' attribute must be the 'id' of a <port>
CompIdRefMustReferenceObject	The 'comp:idRef' attribute must be the 'id' of a model element
CompUnitRefMustReferenceUnitDef	The 'comp:unitRef' attribute must be the 'id' of a UnitDefinition
CompMetaIdRefMustReferenceObject	The 'comp:metaIdRef' attribute must be the 'metaid' of an object
CompParentOfSBRefChildMustBeSubmodel	If <sBaseRef> has a child <sBaseRef> its parent must be a <submodel>
CompInvalidPortRefSyntax	The 'comp:portRef' attribute must have the syntax of an SBML SId
CompInvalidIdRefSyntax	The 'comp:idRef' attribute must have the syntax of an SBML SId
CompInvalidUnitRefSyntax	The 'comp:unitRef' attribute must have the syntax of an SBML SId
CompInvalidMetaIdRefSyntax	The 'comp:metaIdRef' attribute must have the syntax of an XML ID
CompOneSBaseRefOnly	Only one <sbaseRef>
CompDeprecatedSBaseRefSpelling	The spelling 'sbaseRef' is deprecated
CompSBaseRefMustReferenceObject	An SBaseRef must reference an object.
CompSBaseRefMustReferenceOnlyOneObject	An SBaseRef must reference only one other object.
CompNoMultipleReferences	Objects may not be referenced by mutiple SBaseRef constructs.
CompPortMustReferenceObject	Port must reference an object
CompPortMustReferenceOnlyOneObject	Port must reference only one other object.
CompPortAllowedAttributes	Allowed attributes on a Port
CompPortReferencesUnique	Port definitions must be unique.
CompDeletionMustReferenceObject	Deletion must reference an object
CompDeletionMustReferOnlyOneObject	Deletion must reference only one other object.
CompDeletionAllowedAttributes	Allowed attributes on a Deletion
CompReplacedElementMustRefObject	ReplacedElement must reference an object
CompReplacedElementMustRefOnlyOne	ReplacedElement must reference only one other object.
CompReplacedElementAllowedAttributes	Allowed attributes on <replacedElement>
CompReplacedElementSubModelRef	The 'comp:submodelRef' attribute must point to a <submodel>
CompReplacedElementDeletionRef	The 'comp:deletion' attribute must point to a <deletion>
CompReplacedElementConvFactorRef	The 'comp:conversionFactor attribute must point to a <parameter>
CompReplacedElementSameReference	No <replacedElement> refer to same object
CompReplacedElementNoDelAndConvFact	No <replacedElement> with deletion and conversionfactor
CompReplacedByMustRefObject	ReplacedBy must reference an object
CompReplacedByMustRefOnlyOne	ReplacedBy must reference only one other object.
CompReplacedByAllowedAttributes	Allowed attributes on <replacedBy>
CompReplacedBySubModelRef	The 'comp:submodelRef' attribute must point to a <submodel>
CompMustReplaceSameClass	Replaced classes must match.
CompMustReplaceIDs	Replaced IDs must be replaced with IDs.
CompMustReplaceMetaIDs	Replaced metaids must be replaced with metaids.
CompMustReplacePackageIDs	Replaced package IDs must be replaced with package IDs.
CompUnresolvedReference	Unresolved reference.
CompNoModelInReference	No model in referenced document.
CompExtModDefBad	Referenced <externalModelDefinition> unresolvable.
CompModelFlatteningFailed	Model failed to flatten.
CompFlatModelNotValid	Flat model not valid.
CompLineNumbersUnreliable	Line numbers unreliable.
CompFlatteningNotRecognisedReqd	Flattening not implemented for required package.
CompFlatteningNotRecognisedNotReqd	Flattening not implemented for unrequired package.
CompFlatteningNotImplementedNotReqd	Flattening not implemented for unrequired package.
CompFlatteningNotImplementedReqd	Flattening not implemented for required package.
CompFlatteningWarning	Flattening reference may come from package.
CompDeprecatedDeleteFunction	The performDeletions functions is deprecated.
CompDeprecatedReplaceFunction	The performReplacementsAndConversions fuctions is deprecated.
CompDeletedReplacement	Element deleted before a subelement could be replaced.
CompIdRefMayReferenceUnknownPackage	The 'comp:idRef' attribute must be the 'id' of a model element
CompMetaIdRefMayReferenceUnknownPkg	The 'comp:metaIdRef' attribute must be the 'metaid' of a model element