SBML Level 3 Packages

Each Level 3 package effort has its own detailed status page. Please follow the links below for more information, including any specifications that may be available. This list is in alphabetical order by package label. The information in this table is drawn from the master table for Level 3 package statuses.

Note that packages are developed by separate groups apart from the SBML Editors. If you use an SBML LevelĀ 3 Package in your software or your work, please cite the publication associated with the package to give credit to the package developers. Citation information is given in the package detail pages, linked below.

Package Nickname Description Status
Arrays arrays Support for expressing arrays of things Draft available
Hierarchical Model Composition comp Supports the creation of models from other complete models or from model fragments Released
Distributions distrib Support for encoding models that sample values from statistical distributions Released
Dynamic Structures dyn Support for creating and destroying entities during a simulation Draft available
Flux Balance Constraints fbc Support for constraint-based (a.k.a. steady-state) models Released
Groups groups A means for grouping elements Released
Layout layout Support for storing the spatial topology of a network diagram; adjunct to the render package Released
Extended MathML math A suite of packages that collectively allow MathML beyond the subset allowed in SBML core Not started
Multistate, Multicomponent and Multicompartment Species multi Object structures for representing entity pools with multiple states and composed of multiple components, and reaction rules involving them Released
Qualitative Models qual Support for models wherein species do not represent quantity of matter & processes are not reactions per se Released
Rendering render Support for defining the graphical symbols and glyphs used in a diagram of the model; adjunct to the layout package Released
Spatial Processes spatial Support for describing processes that involve a spatial component, and describing the geometries involved Draft available

SBML Level 3 package specification documents are written using a standardized LaTeX template developed by the SBML Team for this purpose. The template is freely available for use by other efforts.